What about using filter needle like BD Blunt Fill Needle with 5-Micron filter (18G x 1 1/2")? Would that help preventing the stopper particles into my syringe when drawing?
While those 5 micron filter-needles will filter out the solid particle, I myself would not accept that as enough because it will not guarantee sterility.
Most likely you will be fine using this idea. And, if you always sterilized the external surface of the stopper before each use, it is even more likely you will be ok.
However, these filter needles do not sterilize -- they only filter out relatively large particles such as dusk and little tiny pieces of glass (people who use glass amps should use these to filter-needles to remove the potential of drawing up any tiny glass dust/shards from breaking open an amp).
Because I have no way to know if whatever you see in the vial is sterile, I would not risk it -- our health is never worth risking.
We can always get different vials, ask for replacements, buy from another source, or just quit using etc. but we can never get a new body.
The small inconvenience of trying to get a replacement, or just taking the tiny financial loss, or doing the work to properly filter to ensure sterility, are all far better than dealing with a serious health issue.
I know it sucks and it is an inconvenience, but please simply contact the source that sold you the products and ask for a replacement, and/or use 0.22 micro sterile filter and sterile empty vial to transfer the contents, but don't risk a potentially adverse health issue.